ICIBM 2021 Program at-a-glance (August 8-10, 2021, virtual via Zoom)
US Eastern Time (EDT)
Sunday, August 8th, 2021
WORKSHOPS
AND TUTORIALS |
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9:00 -
11:30am Session Chair: |
Dr. Sudhir Kumar and team Temple
University A Live Tutorial on Molecular
Evolutionary Genetics Analysis (MEGA) |
10:00 -
11:30am Session Chair: |
Drs. Jiaxin Fan and Rui Xiao The
University of Pennsylvania Perelman School of Medicine Statistical Methods for
Allele-Specific Expression Analysis Using RNA Sequencing Data |
11:30am -
2:00pm |
Break |
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2:00 -
4:30pm Session Chair: |
Drs.
Yulin Dai and Hyun-Hwan Jeong The
University of Texas Health Science Center at Houston Advanced Computational Analyses of
Single-Cell RNA Sequencing Data |
3:00 -
4:30pm Session Chair: |
Drs. Scott Williams, Weihua Guan, Steven F. Jennings,
Philip R.O. Payne, and Jonathan Stubblefield Case Western Reserve University; The University of
Minnesota; University of Arkansas at Little Rock; Washington University in
St. Louis; Arkansas State University No Boundary Thinking in
Bioinformatics |
4:30pm |
Adjourn |
Monday, August 9th, 2021 (US
Eastern Time)
8:15-8:30am |
Opening Remarks (Mindy Shi, Li
Shen) |
8:30-9:10am Session Chair: Li Shen |
Keynote Lecture
James S. Duncan, Ph.D. Fellow of IEEE and AIMBE, Fellow
and former President of MICCAI society. Ebenezer K. Hunt Professor of
Electrical Engineering & Radiology and Biomedical Imaging Yale University, USA
Title: Neuroimage
Analysis in Autism: from Model-Based Estimation to Data-driven Learning |
9:10-9:30am Session Chair: Mindy Shi |
Eminent Scholar Talk
Feng Yue, Ph.D. Director,
Center for Cancer Genomics, Robert H. Lurie Comprehensive Cancer Center Director,
Institute for Augmented Intelligence in Medicine - Center for Advanced
Molecular Analysis Duane
and Susan Burnham Professor of Molecular Medicine Associate
Professor, Department of Biochemistry and Molecular Genetics Feinberg
School of Medicine, Northwestern University, USA
Title: Genome-Wide Detection and Functional
Characterization of Enhancer Hijacking in Cancer Genomes |
9:30-9:45am |
Break |
PAPER PRESENTATION SESSIONS |
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I.
Genomics and Networks Session Chairs:
Li Liu, Jim Havrilla |
|
9:45-10:00am |
pHisPred: A Tool for the
Identification of Histidine Phosphorylation Sites by Integrating Amino Acid
Patterns and Properties 6 Jian Zhao, Minhui Zhuang, Jingjing Liu, Meng Zhang, Cong Zeng, Bin
Jiang, Jing Wu, Xiaofeng Song |
10:00-10:15am |
Mining Functional Gene Modules by
Multi-View NMF of Phenome-Genome Association 104 Xu Jin, WenQian He, MingMing Liu, Lin Wang, YaoGong Zhang,
YingJie Xu, Ling Ma, YaLou Huang, MaoQiang Xie |
10:15-10:30am |
Signaling Interaction Link
Prediction Using Deep Graph Neural Networks Integrating Protein-Protein
Interactions and Omics Data 31 Jiarui Feng, Amanda Zeng, Yixin Chen, Philip Payne, Fuhai Li |
10:30-10:45am |
eSMC: A Statistical Model to Infer
Admixture Events from Individual Genomics Data Yonghui Wang, Zicheng Zhao, Xinyao Miao, Yinan Wang, Xiaobo Qian,
Lingxi Chen, Changfa Wang, Shuaicheng Li |
10:45-11:00am |
Identifying Genes Associated with
Brain Bolumetric Differences Through Tissue Specific Transcriptomic Inference
from GWAS Summary Data Hung Mai, Jingxuan Bao, Paul M. Thompson, Dokyoon Kim, Li Shen |
11:00-11:15am |
Break |
11:15-11:30am |
SCSilicon: a Tool for Synthetic
Single-Cell DNA Sequencing Data Generation103 Xikang Feng, Lingxi Chen |
11:30-11:45am |
McSNAC: A Software to Approximate
First-Order Signaling Networks from Mass Cytometry Data Darren Wethington, Sayak Mukherjee, Jayajit Das |
11:45am
-12:00pm |
FSF-GA: A Feature Selection
Framework for Phenotype Prediction Using Genetic Algorithms Mohammad Erfan
Mowlaei, Xinghua Shi |
12:00-12:15pm |
Deciphering the Role of RNA
Structure in Translation Efficiency Jianan Lin, Yang Chen1, Yuping Zhang, Haifan Lin, Zhengqing Ouyang |
12:15-12:30pm |
Integrative Analysis of Summary
Data from GWAS and eQTL Studies Implicates Genes Differentially Expressed in
Alzheimer’s Disease Brian Lee, Xiaohui Yao, Li Shen |
12:30 -
2:30pm |
Break
|
II.
Deep Learning Session Chairs:
Cong Liu, Lanjing Zhang |
|
2:30-2:45pm |
CAISC: A Software to Integrate
Copy Number Variation and Single Nucleotide Mutations for Genetic
Heterogeneity Profiling and Subclone Detection by Single-cell RNA Sequencing Jeerthi Kannan, Liza Mathews, Zhjie Wu, Neal S Young, Shouguo Gao |
2:45-3:00pm |
The Versatile Alignment Tool
(VAT): A High-Performance Multi-Purpose Short Sequence Mapping Toolkit Cuncong Zhong, Xiangtao Liu |
3:00-3:15pm |
Neural Representations of Cryo-EM
Maps and a Graph-Based Interpretation Nathan Ranno, Dong Si |
3:15-3:30pm |
LENRM: A New Noise Reduction
Method Based on Local Expansion for Detecting Overlapping Protein Complexes Lei Xue, Xu Qing Tang |
3:30-3:45pm |
CrisprVi: A Software for
Visualizing and Analyzing CRISPR Sequences of Prokaryotes Lei Sun, Fu Yan, Gongming Wang, Jinbiao Wang, Yun Li, Jinlin
Huang |
3:45-4:00pm |
Break |
4:00-4:15pm |
Deep Multiview Learning to
Identify Imaging-driven Subtypes in Mild Cognitive Impairment Yixue Feng, Mansu Kim, Xiaohui Yao, Kefei Liu, Qi Long, Li Shen for
the Alzheimer’s Disease Neuroimaging Initiative |
4:15-4:30pm |
B-assembler: A Circular Bacterial
Genome Assembler Fengyuan Huang, Li Xiao, Min Gao,
Ethan J. Vallely, Kevin Dybvig, Prescott Atkinson, Ken B. Waites, Zechen
Chong |
4:30-4:45pm |
DISTEMA: Distance Map-Based
Estimation of Single Protein Model Accuracy with Attentive 2D Convolutional
Neural Network Xiao Chen, Jianling Cheng |
4:45-5:00pm |
BVMHC: Bilateral and Variable Long
Short Term Memory Networks Based Major Histocompatibility Complex Binding
Prediction Limin Jiang, Hui Yu, Jijun Tang, Fei Guo, Yan Guo |
5:00-5:15pm |
Integrative Analysis of eQTL and
GWAS Summary Statistics Reveals Transcriptomic Alteration in Alzheimer Brains Pradeep Varathan, Priyanka Gorijala, Tanner Jacobson, Danai Chasioti,
Kwangsik Nho, Shannon L Risacher, Andrew J Saykin, Jingwen Yan |
5:15-5:45pm Session Chair: |
Flash Talk – Machine Learning and
Bioinformatics 1.
Contribution of Transposable Elements to Tissue-Specific
Gene Regulation in Human Arsala Ali, Ping Liang 2.
Analysis of Factors Impacting the Quality of de novo
Genome Assemblies. Haimeng (Jerry) Tang, Ping Liang, Adonis Skandalis,
Miriam Richards 3.
DRAGOM: Classification and Quantification of Noncoding RNA
in Metagenomic Data Ben Liu, Sirisha Thippabhotla, Jun Zhang, Cuncong Zhong 4.
iMPP: Integrated De Novo Gene Prediction for Metagenomics
Data Sirisha Thippabhotla, Ben Liu, Cuncong Zhong 5.
Bayesian Mixed-Effect Higher-Order Hidden Markov Models
with Applications to Predictive Healthcare Using Electronic Health Record Ying Liao, Yisha Xiang, Zhigen Zhao, Di Ai 6.
Gene Regulatory Networks and Biomarkers Jointly Inferred
by Genome-Wide Genetic, Epigenetic, and Regulatory Factors in Multiple
Sclerosis Astrid M Manuel, Yulin Dai, Hyun-Hwan Jeong, Zhongming
Zhao 7.
Charting the Proteome Landscape in Major Psychiatric
Disorders: From Biomarkers to Biological Pathways Brisa S. Fernandes, Yulin Dai, Peilin Jia, Zhongming Zhao 8.
A Graph Neural Network Model to Estimate Cell-Wise
Metabolic Flux Using Single Cell RNA-seq Data Wennan Chang,Norah Alghamdi, Pengtao Dang, Xiaoyu Lu,
Changlin Wan, Silpa Gampala, Yong Zang, Melissa Fishel, Sha Cao, Chi Zhang
|
5:45-8:00pm |
Break |
8:00-8:40pm Session Chair: Kai Wang |
Keynote Lecture
Chunhua Weng, Ph.D., FACMI, FIAHSI Professor of Biomedical
Informatics, Member of Data Science Institute Co-Director for
Biomedical Informatics, Irving Institute for Clinical and Translational
Research Columbia University
Irving Medical Center, New York, NY, USA
Title: Augmented
Intelligence for Clinical Trials: from Participant Selection to Evidence
Appraisal |
8:40-9:00pm Session Chair: Li Shen |
Eminent Scholar Talk
Graciela Gonzalez-Hernandez, Ph.D. Associate
Professor of Informatics The
Perelman School of Medicine, University of Pennsylvania, USA
Title: Challenges in Digital Epidemiology: Using
Social Media Mining for Health Research |
9:00-9:15pm |
Break |
PAPER PRESENTATION SESSIONS |
|
III.
Medical Informatics and Decision Making Session Chairs:
Yunyun Zhou, Tianle Ma |
|
9:15-9:30pm |
AEDNav: Indoor Navigation for
Locating Automated External Defibrillator 6 Gaurav Rao, Vijay Mago, Pawan Lingras, David W. Savage |
9:30-9:45pm |
Estimating the Optimal Linear
Combination of Predictors Using Spherically Constrained Optimization Priyam Das, Debsurya De, Raju Maiti, Mona Kamal, Katherine A.
Hutcheson, Clifton D. Fuller, Bibhas Chakraborty, Christine B. Peterson |
9:45-10:00pm |
DENSEN: a Convolutional Neural
Network for Estimating Chronological Ages from Panoramic Radiographs Xuedong Wang, Xinyao Miao, Yanle
Liu, Yin Chen, Xiao Cao, Yuchen Zhang, ShuaichengLi and Qin Zhou |
10:00-10:15pm |
Identification of Multimodal Brain
Imaging Association via A Parameter Decomposition based Sparse Multi-view Canonical
Correlation Analysis Method Jin Zhang, Huiai Wang, Ying Zhao, Lei Guo, Lei Du, the Alzheimer’s
Disease Neuroimaging Initiative |
10:15-10:30pm |
An Integrated Interactive COVID-19
Dashboard for Individual Risk Analysis and Real-time Trend Analysis Josh Voytek, Maria Maltepes,
Anna Lengner, Jay S. Patel, Huanmei Wu |
10:30-10:45pm |
Mining Comorbidities of Opioid Use
Disorder from FDA Adverse Event Reporting System and Patient Electronic
Health Records Yiheng Pan, Rong Xu |
10:45-11:00pm |
Break |
11:00-11:15pm |
PheNominal: An EHR-Integrated Web
Application for Structured Deep Phenotyping at the Point of Care James M. Havrilla, Anbumalar Singaravelu, Dennis M. Driscoll, Leonard
Minkovsky, Ingo Helbig, Livija Medne, Kai Wang, Ian Krantz, Bimal R. Desai |
11:15-11:30pm |
Natural Language Processing to
Identify Lupus Nephritis Phenotype in Electronic Health Records Yu Deng, Jennifer A. Pacheco, Anh Chung, Chengsheng Mao, Joshua
C. Smith, Juan Zhao, Wei-Qi Wei, April Barnado, Chunhua Weng, Cong Liu, Adam
Cordon, Jingzhi Yu, Yacob Tedla, Abel Kho, Rosalind Ramsey- Goldman, Theresa
Walunas, Yuan Luo |
11:30-11:45pm |
Expediting Knowledge Acquisition
by a Web Framework for Knowledge Graph Exploration and Visualization (KGEV):
a Case Study on COVID-19 Jacqueline Peng, David Xu, Ryan Lee, Siwei Xu, Yunyun Zhou, Kai Wang |
11:45pm-12:00am |
Disparities in Social Determinants
among Performances of Mortality Prediction with Machine Learning for Sepsis
Patients Hanyin Wang, Yikuan Li, Andrew Naidech, and Yuan Luo |
12:00-12:15am |
On the Role of Deep Learning Model
Complexity in Adversarial Robustness for Medical Images David Rodriguez, Tapsya Nayak, Yidong Chen, Ram Krishnan, Yufei Huang |
12:15-12:30am |
Application of Unsupervised Deep
Learning Algorithms for Identification of Specific Clusters of Chronic Cough
Patients from EMR Data Wei Shao, Xiao Luo, Zuoyi Zhang, Zhi Han, Vasu Chandrasekaran,
Vladimir Turzhitsky, Vishal Bali, Anna R. Roberts, Megan Metzger, Jarod
Baker, Carmen La Rosa, Jessica Weaver, Paul Dexter, Kun Huang |
12:30am |
Adjourn
|
Tuesday, August 10th, 2021 (US
Eastern Time)
8:25-8:30am |
Introduction (Mindy Shi, Li Shen) |
8:30-9:10am Session Chair: Mindy Shi |
Keynote Lecture
Ben Raphael, Ph.D. Professor of Computer Science Princeton University, USA
Title: Quantifying
Tumor Heterogeneity across Time and Space |
9:10-9:30am Session Chair: Kai Wang |
Eminent Scholar Talk
Kai
Tan, Ph.D. Professor
of Pediatrics Children's
Hospital of Philadelphia Perelman
School of Medicine The
University of Pennsylvania, USA
Title: Leverage Systems Biology and Single-Cell
Analysis to Discover Novel Therapeutic Targets |
9:30-9:45am |
Break |
PAPER PRESENTATION SESSIONS |
|
IV.
Genomics, RNA Biology and Diseases Session Chairs:
Jinchuan Xing, Yong Cheng |
|
9:45 -10:00am |
Identifying Genetic Markers
Enriched by Brain Imaging Endophenotypes in Alzheimer's Disease Mansu Kim, Ruiming Wu, Xiaohui Yao, Andrew J. Saykin, Jason H.
Moore, Li Shen for the Alzheimer's Disease Neuroimaging Initiative |
10:00-10:15am |
AutoCoV: Tracking the Early Spread
of COVID-19 in Terms of the Spatial and Temporal Dynamics from Embedding
Space by K-mer Based Deep Learning Inyoung Sung, Sangseon Lee, Minwoo Pak, Yunyol Shin, Sun Kim |
10:15-10:30am |
A Framework to Trace Microbial
Engraftment at the Strain Level During FMT Yiqi Jiang, Shuai Wang, Xianglilan Zhang, Shuaicheng Li |
10:30-10:45am |
Exploration of Chemical Space with
Partial Labeled Noisy Student Self-Training and Self-Supervised Graph
Embedding: Application to Drug Metabolism Yang Liu, Hansaim Lim, Lei Xie |
10:45-11:00am |
Novel lincRNA Discovery and Tissue-Specific
Gene Expression across 30 Normal Human Tissues Xianfeng Chen, Zhifu Sun |
11:00-11:15am |
Break |
11:15-11:30am |
Bioinformatics Analysis Revealed
that Functional Important miRNA Targeted Genes are Associated with Child
Obesity Trait in Genome-wide Association Studies Melinda Song, Jiaqi Yu, Binze Li, Julian Dong, Jeslyn Gao, Lulu
Shang, Xiang Zhou, Yongsheng Bai |
11:30-11:45am |
MSPCD: Predicting circRNA-disease
associations via integrating multi-source data and hierarchical neural network Lei Deng, Dayun Liu,
Yizhan Li, Runqi Wang, Junyi Liu, Jiaxuan Zhang, Hui Liu |
11:45am-12:00pm |
Gene Co-Expression Changes
Underlying the Functional Connectomic Alterations in Alzheimer’s Disease Bing He, Priyanka Gorijala, Linhui Xie, Sha Cao, Jingwen Yan |
12:00-12:15pm |
Prioritization of Risk Genes in
Multiple Sclerosis by a Refined Bayesian Framework Followed by
Tissue-Specificity and Cell Type Feature Assessment Andi Liu, Astrid M Manual, Yulin Dai, Zhongming Zhao |
12:15-12:30pm |
SARS-COV-2 as Potential microRNA
Sponge in COVID-19 Patients Chang Li, Rebecca Wang, Aurora
Wu, Tina Yuan, Kevin Song, Yongsheng Bai, Xiaoming Liu |
12:30-2:30pm |
Break
|
V.
Cancer Informatics Session Chairs:
Wei Zhang, Zhifu Sun |
|
2:30-2:45pm |
Bi-EB: An Empirical Bayesian
Biclustering Algorithm for shared omics patterns between breast cancer tumor
samples and breast cancer cell lines Aida Yazdanparast, Lang Li, Chi
Zhang, Lijun Cheng |
2:45-3:00pm |
Constrained Tensor Factorization
for Computational Phenotyping and Mortality Prediction in Patients with
Cancer Francisco Cai, Chengsheng Mao,
Yuan Luo |
3:00-3:15pm |
Small Molecule Modulation of
Microbiota: A Systems Pharmacology Perspective Qiao Liu, Bohyun Lee, Lei Xie |
3:15-3:30pm |
Cost-effective Low-coverage Whole
Genome Sequencing Assay for Glioma Risk Stratification Jin Fu, Yingfeng Zhu, Xiaofeng Li, Jiajun Qin, Zhongrong Chen,
Ziliang Qian, Jiping Sun, Xianzhen Chen |
3:30-3:45pm |
The Profiling of Gut Microbiota
During Colorectal Cancer Development Jingjing Liu, Wei Dong, Jian
Zhao, Jing Wu, Jinqiang Xia, Shaofei Xie, Xiaofeng Song |
3:45-4:00pm |
Break
|
4:00-4:15pm |
Model Performance and
Interpretability of Semi-Supervised Generative Adversarial Networks to
Predict Oncogenic Variants with Unlabeled Data Zilin Ren, Quan Li , Kajia Cao , Marilyn M Li , Yunyun Zhou, Kai
Wang |
4:15-4:30pm |
Copy Number Variation of Urine
Exfoliated Cells s by Low-Coverage Whole Genome Sequencing for Diagnosis of
Prostate Adenocarcinoma: A Prospective Cohort Study Youyan Guan, Xiaobing Wang, Kaopeng Guan, Dong Wang, Xingang Bi,
Zhendong Xiao, Zejun Xiao, Xingli Shan, Linjun Hu, Jianhui Ma, Changling Li,
Yong Zhang, Jianzhong Shou, Baiyun Wang, Ziliang Qian, Nianzeng Xing |
4:30-4:45pm |
Association of the Tissue
Infiltrated and Peripheral Blood Immune Cell Subsets with Response to
Radiotherapy for Rectal Cancer Xueling Li, Min Zhu, Xingjie Li, Xu Cheng, Xingxu Yi, Fang Ye,
Xiaolai Li, Zongtao Hu, Liwei Zhang, Jinfu Nie |
4:45-5:00pm |
Comparison of Four Supervised
Feature Selection Algorithms Leading to Top features and Gene Signatures from
Multi-Omics Data in Cancer Tapas Bhadra, Saurav Mallik,
Neaj Hasan, Zhongming Zhao |
5:00-5:15pm |
A Landscape of Immune Cell Types
in Tumor Microenvironment Associated with Prognosis and Sensitivity of
Radiotherapy Xingjie Li, Min Zhu, Xueling Li |
5:15-5:45pm Session Chair: Jim Havrilla |
Flash Talk – Single Cell Omics and
Disease Informatics 9. Converting Tabular Data into
Images for Anti-Cancer Drug Response Prediction Using Convolutional Neural
Networks Yitan Zhu, Thomas Brettin, Fangfang Xia, Alexander
Partin, Maulik Shukla, Hyunseung Yoo, Yvonne A. Evrard, James H. Doroshow,
Rick L. Stevens 10. Functional Screening of 3’-UTR
Variants Combined with Genome-wide Association Identifies Causal Regulatory
Mechanisms Impacting Alcohol Consumption Andy B Chen, Kriti S. Thapa, Hongyu Gao, Jill L Reiter,
Hongmei Gu, Junjie Zhang, Xiaoling Xuei, Dongbing Lai, Yue Wang, Howard J.
Edenberg, Yunlong Liu 11. A Machine-Learning Classifier
for Predicting Aneuploidy Risk in Female IVF Patients Siqi Sun, Maximilian Miller, Yanran Wang, Katarzyna M.
Tyc, Richard T. Scott, Jr., Xin Tao, Yana Bromberg, Karen Schindler, Jinchuan
Xing 12. Single Cell-Based
Deconvolution of Liver Diseases Reveals γδ2 T Cells as a Marker in
Hepatocellular Carcinoma Development
Rama Shankar, Mingdian Tan,
Joseph W. Zagorski, Austin J. Goodyke, Jeremy Haskins, Shreya Paithankar,
Dave Chesla, Samuel So, Mei-Sze Chua, Bin Chen 13. Brain Dynamic Functional
Connectivity Predicts Treatment Response to Electroconvulsive Therapy in
Major Depressive Disorder Mohammad. S. E. Sendi,, Hossein Dini, Christopher C.
Abbott, Vince D Calhoun 14. IPDB: Integrated Pregnancy
Database with clinical and omics data Parth G Kothiya, Huanmei Wu, David M. Haas, Shelley D.
Dowden, Bobbie N Ray, Sara K Quinney 15. Therapeutic Re-Positioning of
Amiloride: From Anti- hypertension to Anti-Cancer Aleshia Seaton-Terry, Venkataswarup Tiriveedhi 16. Delineating Cell State
Heterogeneity in Bladder Cancer Antara Biswas, Sivasomasundari Arunarasu, Subhajyoti De
|
5:45-8:00pm |
Break |
8:00-8:40pm Session Chair: Zhongming Zhao |
Keynote Lecture
Ying Xu, Ph.D. Fellow of AAAS Regents-GRA Eminent Scholar Chair Professor of Bioinformatics and
Computational Biology University of Georgia, USA
Title: Towards
Developing a New Theory of Cancer Evolution |
8:40-9:00pm Session Chair: Kong Chen |
Eminent Scholar Talk
Wei Chen, Ph.D. Professor of
Pediatrics, Biostatistics, Human Genetics Director
of Statistical Genetics Core University
of Pittsburgh UPMC
Children's Hospital of Pittsburgh
Title: Understanding Age-related Macular
Degeneration in the Era of Big Data |
9:00-9:15pm |
Break |
PAPER PRESENTATION SESSIONS
|
|
VI.
Transcriptomics Session Chairs:
Rui Xiao, Xiaoming Liu |
|
9:15-9:30pm |
Revealing the Novel Complexity of
Plant Long Non-Coding RNA by Strand-Specific and Whole Transcriptome
Sequencing for Evolutionarily Representative Plant Species Yan Zhu, Longxian Chen, Xiangna Hong, Han Shi, Xuan Li |
9:30-9:45pm |
Identifying Alzheimer’s Genes via
Brain Transcriptome Mapping Jae Young Baik, Mansu Kim,
Jingxuan Bao, Qi Long, Li Shen |
9:45-10:00pm |
On Triangular Inequalities of
Correlation-Based Distances for Gene Expression Profiles Jiaxing Chen, Yen Kaow Ng, Lu Lin, Xianglilan Zhang, Shuaicheng Li |
10:00-10:15pm |
Mouse Blood Cells Types and Aging
Prediction using Penalized Latent Dirichlet Allocation Xiaotian Wu, Yee Voan Teo, Nicola Neretti, Zhijin Wu |
10:15-10:30pm |
Rewired Pathways and Disrupted
Pathway Crosstalk in Schizophrenia Transcriptomes by Multiple Differential
Coexpression Methods Hui Yu, Yan Guo, Jingchun Chen, Xiangning Chen, Peilin Jia,
Zhongming Zhao |
10:30-10:45pm |
Break |
10:45-11:00pm |
kESVR: An Ensemble Model for Drug
Response Prediction in Precision Medicine Using Cancer Cell Lines Gene Expression Abhishek Majumdar,Yueze Liu,Yaoqin Lu, Shaofeng Wu, Lijun Cheng |
11:00-11:15pm |
Revealing the Hadal Viral
Community in the Sediment of New Britain Trench Hui Zhou, Ping Chen, Mengjie Zhang, Jiawang Chen, Jiasong Fang,
Xuan Li |
11:15-11:30pm |
Alternative Splicing Induces
Sample-Level Variation in Gene-Gene Correlations Yihao Lu, Brandon L. Pierce, Pei Wang, Fan Yang, Lin S. Chen |
11:30-11:45pm |
APA-Scan: Detection and
Visualization of 3'-UTR APA with RNA-seq and 3'-end-seq Data Naima Ahmed Fahmi, Khandakar Tanvir Ahmed, Jae-Woong Chang, Heba
Nassereddeen, DeliangFan, Jeongsik Yong, Wei Zhang |
11:45pm-11:55pm Session Chair: Jinchuan Xing |
Award
Ceremony |
11:55pm-12:05am Session Chairs: Mindy Shi, |
Wrap-up
and Closing Remarks |
POSTER SESSIONS
Poster
submissions are included in the Program Book. Poster presenters can submit a
PDF of the finished poster (optionally, along with a short 2-min video link) to
the Program Committee to introduce the work in the ICIBM2021 website. A list is
given below.
·
Kelsey
Mitchell, Shiqi Nan, Chunjiang Qian. Construction of Homogeneity-Inspired
Neural ODE
·
Leonardo
Falcon, Wenjian Huang, Karla Paniagua, Ricardo Ramirez, Mario Flores, Yu-Fang
Jin. Predicting COVID-19 Infection Severity Using CNN on Single Cell RNA-seq
Data
·
Derrick Mullins, Matthew Hayes. Simulating Double Minute Chromosome Evolution using Java
·
Haimeng
(Jerry) Tang, Ping Liang, Adonis Skandalis, Miriam Richards. Analysis of
factors impacting the quality of de novo genome assemblies. Analysis of factors
impacting the quality of de novo genome assemblies (YouTube Video)
· Carl Jones, Claire Walton, Zhifeng Han. Data-Driven Strategies for Largescale Cooperative Control